| Registro completo |
| Provedor de dados: |
ArchiMer
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| País: |
France
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| Título: |
A global ocean atlas of eukaryotic genes
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| Autores: |
Carradec, Quentin
Pelletier, Eric
Da Silva, Corinne
Alberti, Adriana
Seeleuthner, Yoann
Blanc-mathieu, Romain
Lima-mendez, Gipsi
Rocha, Fabio
Tirichine, Leila
Labadie, Karine
Kirilovsky, Amos
Bertrand, Alexis
Engelen, Stefan
Madoui, Mohammed-amin
Meheust, Raphael
Poulain, Julie
Romac, Sarah
Richter, Daniel J.
Yoshikawa, Genki
Dimier, Celine
Kandels-lewis, Stefanie
Picheral, Marc
Searson, Sarah
Jaillon, Olivier
Aury, Jean-marc
Karsenti, Eric
Sullivan, Matthew B.
Sunagawa, Shinichi
Bork, Peer
Not, Fabrice
Hingamp, Pascal
Raes, Jeroen
Guidi, Lionel
Ogata, Hiroyuki
De Vargas, Colomban
Iudicone, Daniele
Bowler, Chris
Wincker, Patrick
Tara Oceans Coordinators,
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| Data: |
2018-01
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| Ano: |
2018
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| Resumo: |
While our knowledge about the roles of microbes and viruses in the ocean has increased tremendously due to recent advances in genomics and metagenomics, research on marine microbial eukaryotes and zooplankton has benefited much less from these new technologies because of their larger genomes, their enormous diversity, and largely unexplored physiologies. Here, we use a metatranscriptomics approach to capture expressed genes in open ocean Tara Oceans stations across four organismal size fractions. The individual sequence reads cluster into 116 million unigenes representing the largest reference collection of eukaryotic transcripts from any single biome. The catalog is used to unveil functions expressed by eukaryotic marine plankton, and to assess their functional biogeography. Almost half of the sequences have no similarity with known proteins, and a great number belong to new gene families with a restricted distribution in the ocean. Overall, the resource provides the foundations for exploring the roles of marine eukaryotes in ocean ecology and biogeochemistry.
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| Tipo: |
Text
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| Idioma: |
Inglês
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| Identificador: |
https://archimer.ifremer.fr/doc/00660/77232/79053.pdf
https://archimer.ifremer.fr/doc/00660/77232/79054.pdf
https://archimer.ifremer.fr/doc/00660/77232/79055.pdf
https://archimer.ifremer.fr/doc/00660/77232/79056.xlsx
https://archimer.ifremer.fr/doc/00660/77232/79057.xlsx
https://archimer.ifremer.fr/doc/00660/77232/79058.xlsx
https://archimer.ifremer.fr/doc/00660/77232/79059.xlsx
https://archimer.ifremer.fr/doc/00660/77232/79060.xlsx
https://archimer.ifremer.fr/doc/00660/77232/79061.xlsx
https://archimer.ifremer.fr/doc/00660/77232/79062.xlsx
https://archimer.ifremer.fr/doc/00660/77232/79063.xlsx
DOI:10.1038/s41467-017-02342-1
https://archimer.ifremer.fr/doc/00660/77232/
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| Editor: |
Nature Publishing Group
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| Relação: |
info:eu-repo/grantAgreement/EC/FP7/287589/EU//MICRO B3
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| Formato: |
application/pdf
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| Fonte: |
Nature Communications (2041-1723) (Nature Publishing Group), 2018-01 , Vol. 9 , N. 373 , P. 13p.
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| Direitos: |
info:eu-repo/semantics/openAccess
restricted use
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